Stem-loop fru-mir-16

Accession

MI0003471

Description

Fugu rubripes fru-mir-16 precursor miRNA

Sequence

227594 reads, 2372.0 reads per million, 12 experiments

gccacugugcugUAGCAGCACGUAAAUAUUGGAGuuaaggcucucugugauaccuCCAGUAUUGAUCGUGCUGCUGAAgcaaagaugac
..((((.((((.((((((((((..((((((((((.((..((.....))..)).))))))))))...)))))))))).)))).)).))..

Structure

gc  -  g    g          -UA          u  ag  u 
  ca cu ugcu UAGCAGCACG   AAUAUUGGAG ua  gc c
  || || |||| ||||||||||   |||||||||| ||  || u
  gu ga acgA GUCGUCGUGC   UUAUGACCuc au  ug c
ca  a  a    A          UAG          c  ag  u 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042285.1|: 16522485-16522573 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from fru-mir-16

Mature fru-miR-16-5p

• Accession: MIMAT0003107
• Description: Fugu rubripes fru-miR-16-5p mature miRNA
• Sequence: 13 - UAGCAGCACGUAAAUAUUGGAG - 34
• Evidence: not_experimental

Mature fru-miR-16-3p

• Accession: MIMAT0052922
• Description: Fugu rubripes fru-miR-16-3p mature miRNA
• Sequence: 56 - CCAGUAUUGAUCGUGCUGCUGAA - 78
• Evidence: not_experimental

References