Accession
MI0003472
Description
Tetraodon nigroviridis
tni-mir-16a precursor miRNA
Sequence
40352
reads,
1478.0
reads per million, 3 experiments
UAGCAGCACGUAAAUAUUGGAGuuaaggcucucugugauaccUCCAGUAUUGAUCGUGCUGCUGaagcaaag
((((((((((..((((((((((.((..((.....))..)).))))))))))...))))))))))........
((((((((((..((((((((((.((..((.....))..)).))))))))))...))))))))))........
Structure
-------- -UA u ag u
UAGCAGCACG AAUAUUGGAG ua gc c
|||||||||| |||||||||| || || u
GUCGUCGUGC UUAUGACCUc au ug c
gaaacgaa UAG c ag u
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
This Tetraodon miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).
Genome context
2: 11019481-11019552 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tni-mir-16a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature tni-miR-16a-5p
| Accession | MIMAT0003108 |
| Description | Tetraodon nigroviridis tni-miR-16a-5p mature miRNA |
| Sequence | 1 - UAGCAGCACGUAAAUAUUGGAG - 22 |
| Evidence | not_experimental |
Mature tni-miR-16a-3p
| Accession | MIMAT0052988 |
| Description | Tetraodon nigroviridis tni-miR-16a-3p mature miRNA |
| Sequence | 43 - UCCAGUAUUGAUCGUGCUGCUG - 64 |
| Evidence | not_experimental |
References
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