Stem-loop ppt-MIR390a

Accession

MI0003494

Description

Physcomitrella patens ppt-MIR390a precursor miRNA

Literature search

3 open access papers mention ppt-MIR390a
(53 sentences)

Sequence

88265 reads, 3832.0 reads per million, 10 experiments

caugauacaauuacgAAGCUCAGGAGGGAUAGCGCCauucucuguucuucucuaucgacacuugguaaaccagcuugugcuagcuaugggcagagauauggCGUUAUCCAUUCUGAGCUUUGcaagugucucgugcu
(((((.(((.((.((((((((((((.(((((((((((((((((((((....(((.(.(((.((((....))))..)))).)))....))))))))).)))))))))))).)))))))))))).)).))).)))))..

Structure

--     u   a  a            G            -         uucu   u g   -c    u 
  cauga aca uu cgAAGCUCAGGA GGAUAGCGCCau ucucuguuc    cua c aca  uugg a
  ||||| ||| || |||||||||||| |||||||||||| |||||||||    ||| | |||  ||||  
  gugcu ugu aa GUUUCGAGUCUU CCUAUUGCggua agagacggg    gau g ugu  gacc a
uc     c   g  c            A            u         uauc   c -   uc    a 

Annotation confidence High

Genome context

Chr02: 16652621-16652757 [+]

Mature ppt-miR390a-5p

• Accession: MIMAT0003131
• Description: Physcomitrella patens ppt-miR390a-5p mature miRNA
• Sequence: 16 - AAGCUCAGGAGGGAUAGCGCC - 36
• Evidence: experimental ; cloned [1], 454 [3]

Mature ppt-miR390a-3p

• Accession: MIMAT0053634
• Description: Physcomitrella patens ppt-miR390a-3p mature miRNA
• Sequence: 102 - CGUUAUCCAUUCUGAGCUUUG - 122
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


3. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769