Stem-loop ppt-MIR390b

Accession

MI0003495

Description

Physcomitrella patens ppt-MIR390b precursor miRNA

Literature search

3 open access papers mention ppt-MIR390b
(53 sentences)

Sequence

87438 reads, 3804.0 reads per million, 10 experiments

aucaagcugcugggagauacaauuacgAAGCUCAGGAGGGAUAGCGCCcagcccugcuuuuacuguucaaucaguuagagugcuucugauaguaagaugcagaugcaugaCGCUAUCCAUUCUGAGCUUUGcaacugugucccccuaauuugggcaaccggaucgguuagcuggu
((((.(((((((((.((((((.((.((((((((((((.((((((((.(..((.(((((((((((((.((...(((......)))..))))))))))).))))..))..).)))))))).)))))))))))).)).)))))).)))..((((((....)))))).)).))))))))

Structure

    a    -  -------------------   a      a  a            G        C ca  -c    -         u  auc   ua 
auca gcug cu                   ggg gauaca uu cgAAGCUCAGGA GGAUAGCG C  gc  cugc uuuuacugu ca   agu  g
|||| |||| ||                   ||| |||||| || |||||||||||| |||||||| |  ||  |||| ||||||||| ||   |||   
uggu cgau gg                   ccc cugugu aa GUUUCGAGUCUU CCUAUCGC g  cg  gacg agaaugaua gu   ucg  a
    -    u  cuaggccaacggguuuaau   c      c  c            A        a ua  ua    u         -  -cu   ug 

Annotation confidence High

Genome context

Chr11: 10644979-10645153 [+]

Mature ppt-miR390b-5p

• Accession: MIMAT0003132
• Description: Physcomitrella patens ppt-miR390b-5p mature miRNA
• Sequence: 28 - AAGCUCAGGAGGGAUAGCGCC - 48
• Evidence: experimental ; cloned [1], 454 [2]

Mature ppt-miR390b-3p

• Accession: MIMAT0053635
• Description: Physcomitrella patens ppt-miR390b-3p mature miRNA
• Sequence: 111 - CGCUAUCCAUUCUGAGCUUUG - 131
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769