Stem-loop ppt-MIR319b

Accession

MI0003497

Description

Physcomitrella patens ppt-MIR319b precursor miRNA

Literature search

3 open access papers mention ppt-MIR319b
(27 sentences)

Sequence

36708 reads, 1586.0 reads per million, 10 experiments

gAGCUCUUUUCAGUCCAGUAgcagcuaaugucgaagguuguaccgcugccgacucaaacuuccggcuuccauaucacgacgcgugauauggaauccgaaggucugauccgggagcugaucgaucuccagguuagcaucuCUUGGACUGAAGGGAGCUCCu
((((((((((((((((((.((..((((((.(.((.(((((..(.(((.(((..(((.((((.(((.((((((((((((...)))))))))))).))).)))).)))..))).))).)..))))))).).))))))..)).))))))))))))))))))..

Structure

--                  U  ca      g c  a     ua c   g   ac   a    c   c            a 
  gAGCUCUUUUCAGUCCAG Ag  gcuaau u ga gguug  c gcu ccg  uca acuu cgg uuccauaucacg  
  |||||||||||||||||| ||  |||||| | || |||||  | ||| |||  ||| |||| ||| |||||||||||| c
  CUCGAGGGAAGUCAGGUU uc  cgauug a cu cuagc  g cga ggc  agu ugga gcc aagguauagugc  
uC                  C  ua      g c  -     ua u   g   cu   c    a   u            g 

Annotation confidence High

Genome context

Chr19: 4255957-4256116 [-]

Mature ppt-miR319b-5p

• Accession: MIMAT0053637
• Description: Physcomitrella patens ppt-miR319b-5p mature miRNA
• Sequence: 2 - AGCUCUUUUCAGUCCAGUA - 20
• Evidence: experimental ; unknown

Mature ppt-miR319b-3p

• Accession: MIMAT0003134
• Description: Physcomitrella patens ppt-miR319b-3p mature miRNA
• Sequence: 140 - CUUGGACUGAAGGGAGCUCC - 159
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769