Stem-loop ppt-MIR319c

Accession

MI0003498

Description

Physcomitrella patens ppt-MIR319c precursor miRNA

Literature search

4 open access papers mention ppt-MIR319c
(15 sentences)

Sequence

51760 reads, 2226.0 reads per million, 10 experiments

uaaccucacuggcuguggGAGCUUCCUUCGGUUCAAUAGUggcugauaugagguugcacugcugccgacucaaacuuccggcuucccucucuuagaauggcagggaauccgaaugucugaugcgggagcugagcggucuucaacucagcuucuCUUGGACUGAAGGGAGCUCCCaugucuuugugguua
(((((.((..(((.((((((((((((((((((((((.((.((((((..(((((((((.(.(((.(((..(((.((...(((.((((((.((.......)).)))))).)))...)).)))..))).))).).)))).)))))..)))))).)).)))))))))))))))))))))))))..)).)))))

Structure

     u  cu   u                      U  U      ua     -    a u   g   ac   a  uuc   c      c  uu 
uaacc ca  ggc guggGAGCUUCCUUCGGUUCAA AG ggcuga  ugagg uugc c gcu ccg  uca ac   cgg uucccu uc  a
||||| ||  ||| |||||||||||||||||||||| || ||||||  ||||| |||| | ||| |||  ||| ||   ||| |||||| ||  g
auugg gu  cug uaCCCUCGAGGGAAGUCAGGUU uc ucgacu  acuuc ggcg g cga ggc  agu ug   gcc aaggga gg  a
     u  uu   -                      C  u      ca     u    a u   g   gu   c  uaa   u      c  ua 

Annotation confidence High

Genome context

Chr09: 7950311-7950499 [+]

Mature ppt-miR319c-5p

• Accession: MIMAT0053638
• Description: Physcomitrella patens ppt-miR319c-5p mature miRNA
• Sequence: 19 - GAGCUUCCUUCGGUUCAAUAGU - 40
• Evidence: experimental ; unknown

Mature ppt-miR319c-3p

• Accession: MIMAT0003135
• Description: Physcomitrella patens ppt-miR319c-3p mature miRNA
• Sequence: 154 - CUUGGACUGAAGGGAGCUCCC - 174
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769