Accession
MI0003500
Description
Physcomitrella patens
ppt-MIR533a precursor miRNA
Sequence
augggGAGCUGGCCAGGCUGUGAGGGacggagcagaguuggcuuguggcuccuuguggcccccuccagcagcuuccucCUCACAGUCUGCACAGCUCUCcgu
(((((((((((..(((((((((((((..(((((...(((((...(.((((......)))))...))))).))))).)))))))))))))..)))))))))))
(((((((((((..(((((((((((((..(((((...(((((...(.((((......)))))...))))).))))).)))))))))))))..)))))))))))
Structure
GC ac aga cuu u cc
augggGAGCUG CAGGCUGUGAGGG ggagc guugg g ggcu u
||||||||||| ||||||||||||| ||||| ||||| | ||||
ugcCUCUCGAC GUCUGACACUCcu cuucg cgacc c ccgg u
AC -c --a ucc - ug
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
Arazi et al. identified a mature miRNA from the 5' arm of this precursor, and called it miR533 [1]. Axtell et al. show by deep sequencing that the 3' product is the predominant one [3]. The 5' miRNA is renamed miR533* here.
Genome context
Chr09: 12268788-12268889 [+]
Database links
Mature ppt-miR533a-5p
| Accession | MIMAT0003137 |
| Description | Physcomitrella patens ppt-miR533a-5p mature miRNA |
| Sequence | 6 - GAGCUGGCCAGGCUGUGAGGG - 26 |
| Evidence |
experimental
cloned [1] |
Mature ppt-miR533a-3p
| Accession | MIMAT0004783 |
| Description | Physcomitrella patens ppt-miR533a-3p mature miRNA |
| Sequence | 79 - CUCACAGUCUGCACAGCUCUC - 99 |
| Evidence |
experimental
454 [3] |
References
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