Stem-loop ppt-MIR534a

Accession

MI0003501

Description

Physcomitrella patens ppt-MIR534a precursor miRNA

Literature search

1 open access papers mention ppt-MIR534a
(2 sentences)

Sequence

auaugcaugcaacuuguguggacagacugacuagucuagugguguaguggaaaguauuaguugguugaugcacgauguuguuuugcaacaagugacucgucgcugcaauacugaacccacaaguuuuggaaguuguuuugauuggggccacccacauugcucgacuagauucagUAUGUCCAUUGCAGUUGCAUACauau
(((((.((((((((...(((((((.(((((((((((.((((((((.((((..((((((.((.(((.(((((((..((((((...)))))).)))...)))))))))))))))....)))).....((((((....))))))..(((....))))))))))).))))))..))))).)))))))...)))))))).)))))

Structure

     c        ugu       g     --      u        --------------------------------a    --aa      a  u   u    ---   ga      u 
auaug augcaacu   guggaca acuga  cuaguc aguggugu                                 gugg    aguauu gu ggu gaug   cac  uguugu  
||||| ||||||||   ||||||| |||||  |||||| ||||||||                                 ||||    |||||| || ||| ||||   |||  |||||| u
uauaC UACGUUGA   UACCUGU Ugacu  gaucag ucguuaca                                 cacc    ucauaa cg ucg cugc   gug  acaacg  
     A        CGU       A     ua      c        cccaccgggguuaguuuuguugaagguuuugaa    caag      -  -   -    uca   -a      u 

Annotation confidence Not enough data

Genome context

Chr16: 5980156-5980355 [-]

Mature ppt-miR534a

• Accession: MIMAT0003138
• Description: Physcomitrella patens ppt-miR534a mature miRNA
• Sequence: 175 - UAUGUCCAUUGCAGUUGCAUAC - 196
• Evidence: experimental ; cloned [1], 454 [3]

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


3. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769