Stem-loop ppt-MIR535a

Accession

MI0003502

Description

Physcomitrella patens ppt-MIR535a precursor miRNA

Literature search

2 open access papers mention ppt-MIR535a
(3 sentences)

Sequence

4354117 reads, 178672.0 reads per million, 10 experiments

ggaggugaaacgguggagaaccuaggUGACAACGAGAGAGAGCACGCuggaaugcuuuucaugcaauacgcuuggauguguucuagcGUGCCCUCUACCGUUGUCGCCaaacaucuucuccaugacuucuccucu
(((((.(((...((((((((....((((((((((..((((.((((((((((((((..((((.((.....)).)))).)))))))))))))).))))..)))))))))).......))))))))...))).)))))

Structure

     u   acg        ---ccua          AG    A              uu    u  a 
ggagg gaa   guggagaa       ggUGACAACG  AGAG GCACGCuggaaugc  uuca gc a
||||| |||   ||||||||       ||||||||||  |||| ||||||||||||||  |||| || u
ucucc cuu   uaccucuu       CCGCUGUUGC  UCUC CGUGcgaucuugug  aggu cg a
     u   cag        cuacaaa          CA    C              -u    u  c 

Annotation confidence High

Genome context

Chr08: 9104145-9104279 [+]

Mature ppt-miR535a-5p

• Accession: MIMAT0003139
• Description: Physcomitrella patens ppt-miR535a-5p mature miRNA
• Sequence: 27 - UGACAACGAGAGAGAGCACGC - 47
• Evidence: experimental ; cloned [1-2], 454 [3]

Mature ppt-miR535a-3p

• Accession: MIMAT0053640
• Description: Physcomitrella patens ppt-miR535a-3p mature miRNA
• Sequence: 88 - GUGCCCUCUACCGUUGUCGCC - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


3. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769