Stem-loop ppt-MIR535b

Accession

MI0003503

Description

Physcomitrella patens ppt-MIR535b precursor miRNA

Literature search

2 open access papers mention ppt-MIR535b
(3 sentences)

Sequence

4353817 reads, 178659.0 reads per million, 10 experiments

gUGACAACGAGAGAGAGCACGCuggaaugcacucuuguaagaagcauggguauguucuuguGUGCCCUCUCCCGCUGUCGC
((((((.((.(((((.((((((.((((((.((((.(((.....))).)))).)))))).)))))).))))).)).))))))

Structure

      A  A     A      u      c    u   a 
gUGACA CG GAGAG GCACGC ggaaug acuc ugu a
|||||| || ||||| |||||| |||||| |||| ||| g
CGCUGU GC CUCUC CGUGug ucuugu uggg acg a
      C  C     C      u      a    u   a 

Annotation confidence High

Genome context

Chr12: 4411506-4411586 [-]

Mature ppt-miR535b-5p

• Accession: MIMAT0003140
• Description: Physcomitrella patens ppt-miR535b-5p mature miRNA
• Sequence: 2 - UGACAACGAGAGAGAGCACGC - 22
• Evidence: experimental ; cloned [1], 454 [3]

Mature ppt-miR535b-3p

• Accession: MIMAT0053641
• Description: Physcomitrella patens ppt-miR535b-3p mature miRNA
• Sequence: 62 - GUGCCCUCUCCCGCUGUCGC - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


3. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769