Stem-loop ppt-MIR535c

Accession

MI0003504

Description

Physcomitrella patens ppt-MIR535c precursor miRNA

Literature search

2 open access papers mention ppt-MIR535c
(3 sentences)

Sequence

4354721 reads, 178698.0 reads per million, 10 experiments

gUGACAACGAGAGAGAGCACGCuggaaugcuuucacgcaauaagccuggauguguucuugcGUGCCCUUUCCCGUUGUCGC
(((((((((.(((((.((((((.(((((((.((((.((.....)).)))).))))))).)))))).))))).)))))))))

Structure

         A     A      u       u    c  a 
gUGACAACG GAGAG GCACGC ggaaugc uuca gc a
||||||||| ||||| |||||| ||||||| |||| || u
CGCUGUUGC CUUUC CGUGcg ucuugug aggu cg a
         C     C      u       u    c  a 

Annotation confidence High

Genome context

Chr24: 12589745-12589825 [-]

Mature ppt-miR535c-5p

• Accession: MIMAT0003141
• Description: Physcomitrella patens ppt-miR535c-5p mature miRNA
• Sequence: 2 - UGACAACGAGAGAGAGCACGC - 22
• Evidence: experimental ; cloned [1-2], 454 [3]

Mature ppt-miR535c-3p

• Accession: MIMAT0053642
• Description: Physcomitrella patens ppt-miR535c-3p mature miRNA
• Sequence: 62 - GUGCCCUUUCCCGUUGUCGC - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


3. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769