Stem-loop osa-MIR535

Accession

MI0003505

Description

Oryza sativa osa-MIR535 precursor miRNA

Literature search

20 open access papers mention osa-MIR535
(32 sentences)

Sequence

5553 reads, 3861 reads per million, 2 experiments

ggcggUGACAACGAGAGAGAGCACGCcggugcggcggucacggugagccggcccgcggcggcguaccugcGUGCUUUCUCCCGUUGUCACUgcc
(((((((((((((.((((((((((((.((((((.(.(((.(((.(......)))).))).))))))).)))))))))))).)))))))))))))

Structure

             A            c      g g   a   u ag 
ggcggUGACAACG GAGAGAGCACGC ggugcg c guc cgg g  c
||||||||||||| |||||||||||| |||||| | ||| ||| |   
ccgUCACUGUUGC CUCUUUCGUGcg ccaugc g cgg gcc c  c
             C            u      - g   c   - gg 

Annotation confidence Not enough data

Genome context

Chr11: 16290530-16290623 [-]

Mature osa-miR535-5p

• Accession: MIMAT0003142
• Description: Oryza sativa osa-miR535-5p mature miRNA
• Sequence: 6 - UGACAACGAGAGAGAGCACGC - 26
• Evidence: experimental ; cloned [1]

Mature osa-miR535-3p

• Accession: MIMAT0022927
• Description: Oryza sativa osa-miR535-3p mature miRNA
• Sequence: 71 - GUGCUUUCUCCCGUUGUCACU - 91
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176