Accession
MI0003507
Description
Physcomitrella patens
ppt-MIR536a precursor miRNA
Literature search
2 open access papers mention ppt-MIR536a
(16 sentences)
(16 sentences)
Sequence
2724298
reads,
116691.0
reads per million, 10 experiments
ugauuccaccccuuggaUGUCACUGCUUGGCACAAUCcucuuauugugaauuucauguccucuuucgugguuagucgauagaguuguacuaccuuuauucauccaguguuauaaauguuuguccagugcuagcucuucacuuggggauugcacaacagggggUUCGUGCCAAGCUGUGUGCAACcuaagggugguuuua
(((..((((((...((.((((((.(((((((((((((((((..(((((........((((((....((((.........(((((((((((((.(((((.(((...)))..))))).))......))))).))))))))))..))))))..))))).)))))))).))))))))).))).))).))...))))))..)))
(((..((((((...((.((((((.(((((((((((((((((..(((((........((((((....((((.........(((((((((((((.(((((.(((...)))..))))).))......))))).))))))))))..))))))..))))).)))))))).))))))))).))).))).))...))))))..)))
Structure
uu cuu a - U - ua aauuucau uuuc uuagucgau - ------ c -u c uga ccaccc gg UGU CAC GCUUGGCAC AAUCcucu uugug guccuc gugg agaguu guacu ac uuuau cau ||| |||||| || ||| ||| ||||||||| |||||||| ||||| |||||| |||| |||||| ||||| || ||||| ||| c auu gguggg cC ACG GUG CGAACCGUG UUggggga aacac uagggg cacu ucucga cguga ug aaaua gug uu aau A U U C -c ------gu --uu --------- u ccuguu u uu a
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr12: 5501130-5501328 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppt-MIR536a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR536a-5p
| Accession | MIMAT0053644 |
| Description | Physcomitrella patens ppt-miR536a-5p mature miRNA |
| Sequence | 18 - UGUCACUGCUUGGCACAAUC - 37 |
| Evidence |
experimental
unknown |
Mature ppt-miR536a-3p
| Accession | MIMAT0003144 |
| Description | Physcomitrella patens ppt-miR536a-3p mature miRNA |
| Sequence | 163 - UUCGUGCCAAGCUGUGUGCAAC - 184 |
| Evidence |
experimental
cloned [1-2], 454 [3] |
References
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