Accession
MI0003508
Description
Physcomitrella patens
ppt-MIR537a precursor miRNA
Literature search
1 open access papers mention ppt-MIR537a
(1 sentences)
(1 sentences)
Sequence
107584
reads,
4732.0
reads per million, 10 experiments
guugucgucauauaugGACUGUAGAAACACCUGAAGCgagugaggaccauccgauucuagccauggaaacagauaagagcucaugucuggguuccuguuucugugaugcuuuugagguuugcgcaugagauagcaucgguuaggcuucaaacucUUGAGGUGUUUCUACAGGCUAcauaugauugauagc
(((((((((((((.(((.((((((((((((((.(((.(..(((((.((..(((((.(((..(((((((((((....(((((((....))))))))))))))))))((((.............))))....))).)))))...)))))))..).))).)))))))))))))).))).)))))).)))))))
(((((((((((((.(((.((((((((((((((.(((.(..(((((.((..(((((.(((..(((((((((((....(((((((....))))))))))))))))))((((.............))))....))).)))))...)))))))..).))).)))))))))))))).))).)))))).)))))))
Structure
- a A G C ag a -au u -----------------------gc auaa u
guugucg ucauau ugG CUGUAGAAACACCU AAG g ugagg cc ccgau cua cauggaaacag gagcuca g
||||||| |||||| ||| |||||||||||||| ||| | ||||| || ||||| ||| ||||||||||| |||||||
cgauagu aguaua AUC GACAUCUUUGUGGA UUc c acuuc gg ggcua gau gugucuuuguc cuugggu u
u c G G u aa - auu c agaguacgcguuuggaguuuucgua ---- c
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr13: 5423921-5424110 [-]
Database links
Mature ppt-miR537a-5p
| Accession | MIMAT0053645 |
| Description | Physcomitrella patens ppt-miR537a-5p mature miRNA |
| Sequence | 17 - GACUGUAGAAACACCUGAAGC - 37 |
| Evidence |
experimental
unknown |
Mature ppt-miR537a-3p
| Accession | MIMAT0003145 |
| Description | Physcomitrella patens ppt-miR537a-3p mature miRNA |
| Sequence | 155 - UUGAGGUGUUUCUACAGGCUA - 175 |
| Evidence |
experimental
cloned [1-2], 454 [3] |
References
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