Stem-loop ppt-MIR537b

Accession

MI0003509

Description

Physcomitrella patens ppt-MIR537b precursor miRNA

Literature search

1 open access papers mention ppt-MIR537b
(1 sentences)

Sequence

112121 reads, 4936.0 reads per million, 10 experiments

ucauaucugGACUGUAGAAACACCUGAAGUgacugaaguuaguccgguuuagguaugagaaugauuggagcaccucuccagauguuccagauguaaugaaaccggugcaagcuucaagcucUUGAGGUGUUUCUACAGGCUAcauauga
((((((.(((.((((((((((((((.(((.(..(((((((.((((((((((.((.((.(((((.((((((.....)))))).))))))).)).))....)))))).)).)))))))..).))).)))))))))))))).))).))))))

Structure

      c   A              G   U ac       a  -      ----  g  a  a     a      c 
ucauau ugG CUGUAGAAACACCU AAG g  ugaaguu gu ccgguu    ua gu ug gaaug uuggag a
|||||| ||| |||||||||||||| ||| |  ||||||| || ||||||    || || || ||||| |||||| c
aguaua AUC GACAUCUUUGUGGA UUc c  acuucga cg ggccaa    au ua ac cuugu gaccuc c
      c   G              G   u ga       a  u      agua  g  g  -     a      u 

Annotation confidence High

Genome context

Chr03: 2354702-2354850 [+]

Mature ppt-miR537b-5p

• Accession: MIMAT0053646
• Description: Physcomitrella patens ppt-miR537b-5p mature miRNA
• Sequence: 10 - GACUGUAGAAACACCUGAAGU - 30
• Evidence: experimental ; unknown

Mature ppt-miR537b-3p

• Accession: MIMAT0003146
• Description: Physcomitrella patens ppt-miR537b-3p mature miRNA
• Sequence: 122 - UUGAGGUGUUUCUACAGGCUA - 142
• Evidence: experimental ; cloned [1], 454 [2]

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769