Stem-loop ppt-MIR538a

Accession

MI0003510

Description

Physcomitrella patens ppt-MIR538a precursor miRNA

Literature search

2 open access papers mention ppt-MIR538a
(2 sentences)

Sequence

164971 reads, 7123.0 reads per million, 10 experiments

uuacaaugaguuugugagucuccaugcugcucuaacaUUGCAUGGAGUCUAUGUCUGGAguauuguccuucauucccgugcaaaugcugaaguaaugcaagaaugugaacauugggacuauucCAGACGUAGCCUUCAUGCAUGUuagagugauguggaaacccgugaacuacuuguaa
.(((((..((((((((.((.((((((.(((((((((((.((((((((.((((((((((((((..(((((((((.....((((..(((....))).)))).....)))).....))))))))))))))))))).))))))))))))))))))).)))))).)).))))))))..))))).

Structure

u     ug        a  c      c           U        U              uu     -----    ucccg    aa   u 
 uacaa  aguuugug gu uccaug ugcucuaacaU GCAUGGAG CUAUGUCUGGAgua  guccu     ucau     ugca  ugc g
 |||||  |||||||| || |||||| ||||||||||| |||||||| ||||||||||||||  |||||     ||||     ||||  |||  
 auguu  ucaagugc ca aggugu gugagauUGUA CGUACUUC GAUGCAGACcuuau  caggg     agug     acgu  aug a
a     ca        c  a      a           -        C              --     uuaca    uaaga    -a   a 

Annotation confidence Medium

Genome context

Chr19: 4360876-4361054 [-]

Mature ppt-miR538a-5p

• Accession: MIMAT0003147
• Description: Physcomitrella patens ppt-miR538a-5p mature miRNA
• Sequence: 38 - UUGCAUGGAGUCUAUGUCUGGA - 59
• Evidence: experimental ; cloned [1], 454 [2]

Mature ppt-miR538a-3p

• Accession: MIMAT0053647
• Description: Physcomitrella patens ppt-miR538a-3p mature miRNA
• Sequence: 124 - CAGACGUAGCCUUCAUGCAUGU - 145
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769