Stem-loop ppt-MIR538b

Accession

MI0003511

Description

Physcomitrella patens ppt-MIR538b precursor miRNA

Literature search

1 open access papers mention ppt-MIR538b
(1 sentences)

Sequence

184960 reads, 7977.0 reads per million, 10 experiments

ccaugcuucucuaacgUUGCAUGGAGUCUAUGUCUGGAccuccuccauuugcucuuucaagagaaugugagaauuucgagauuCGGACAUAGCCUUCAUGCAUGcuagaguagaaugg
((((.((.(((((.(((.((((((((.(((((((((((.((((((((((..((((....)))))))).)))......))).))))))))))).))))))))))).))))).)).))))

Structure

    g  u     a   U        U           c   ------   -    ug    u 
ccau cu cucua cgU GCAUGGAG CUAUGUCUGGA cuc      cuc cauu  cucu u
|||| || ||||| ||| |||||||| ||||||||||| |||      ||| ||||  ||||  
ggua ga gagau GUA CGUACUUC GAUACAGGCuu gag      gag guaa  gaga c
    a  u     c   -        C           a   cuuuaa   u    --    a 

Annotation confidence High

Genome context

Chr18: 8331179-8331296 [-]

Mature ppt-miR538b-5p

• Accession: MIMAT0003148
• Description: Physcomitrella patens ppt-miR538b-5p mature miRNA
• Sequence: 17 - UUGCAUGGAGUCUAUGUCUGGA - 38
• Evidence: experimental ; cloned [1], 454 [2]

Mature ppt-miR538b-3p

• Accession: MIMAT0053648
• Description: Physcomitrella patens ppt-miR538b-3p mature miRNA
• Sequence: 84 - CGGACAUAGCCUUCAUGCAUG - 104
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769