Stem-loop ppt-MIR538c

Accession

MI0003512

Description

Physcomitrella patens ppt-MIR538c precursor miRNA

Literature search

1 open access papers mention ppt-MIR538c
(1 sentences)

Sequence

190385 reads, 8210.0 reads per million, 10 experiments

uuacaaagaguucuugagucuccaugcuucucugacgUUGCAUGGAGUCUAUGUCUGGAccuucuccauuuccucuuucaagagaaugugagcauugaaggauuCGGACAUAGCCUUCAUGCAUGcuagaguaucauggaggcccgugaacuacuuguaa
.(((((..(((((.((.(((((((((...(((((.(((.((((((((.((((((((((((((((((((((..((((....)))))))).)).....))))).))))))))))).))))))))))).)))))...))))))))).)).)))))..))))).

Structure

u     ag     u  a         cuu     a   U        U           -     -----  -    uc    u 
 uacaa  aguuc ug gucuccaug   cucug cgU GCAUGGAG CUAUGUCUGGA ccuuc     uc cauu  cucu u
 |||||  ||||| || |||||||||   ||||| ||| |||||||| ||||||||||| |||||     || ||||  ||||  
 auguu  ucaag gc cggagguac   gagau GUA CGUACUUC GAUACAGGCuu ggaag     ag guaa  gaga c
a     ca     u  c         uau     c   -        C           a     uuacg  u    --    a 

Annotation confidence High

Genome context

Chr21: 8044815-8044974 [-]

Mature ppt-miR538c-5p

• Accession: MIMAT0003149
• Description: Physcomitrella patens ppt-miR538c-5p mature miRNA
• Sequence: 38 - UUGCAUGGAGUCUAUGUCUGGA - 59
• Evidence: experimental ; cloned [1], 454 [2]

Mature ppt-miR538c-3p

• Accession: MIMAT0053649
• Description: Physcomitrella patens ppt-miR538c-3p mature miRNA
• Sequence: 105 - CGGACAUAGCCUUCAUGCAUG - 125
• Evidence: experimental ; unknown

References

1. PubMed ID: 16146523
   Cloning and characterization of micro-RNAs from moss
   "Arazi T, Talmor-Neiman M, Stav R, Riese M, Huijser P, Baulcombe DC"
   "Plant J (2005) 43:837-848


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769