Accession
MI0003554
Description
Rattus norvegicus
rno-mir-20b precursor miRNA
Gene family
MIPF0000001;
mir-17
Literature search
32 open access papers mention rno-mir-20b
(71 sentences)
(71 sentences)
Sequence
1557
reads,
38
reads per million, 264 experiments
guagugcCAAAGUGCUCAUAGUGCAGGUAGguuuugcugcacucuACUGCAGUGUGAGCACUUCUGGuacuc
..((((((((((((((((((.(((((.(((((........)).)))))))).))))))))))).))))))).
..((((((((((((((((((.(((((.(((((........)).)))))))).))))))))))).))))))).
Structure
gu - G G - uuu agugcCA AAGUGCUCAUA UGCAG UAG gu g ||||||| ||||||||||| ||||| ||| || ucauGGU UUCACGAGUGU ACGUC Auc ca c -c C G - u cgu
Annotation confidence
High
Do you think this miRNA is real?
Comments
The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [2]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
chrX: 140117518-140117589 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from rno-mir-20b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature rno-miR-20b-5p
| Accession | MIMAT0003211 |
| Description | Rattus norvegicus rno-miR-20b-5p mature miRNA |
| Sequence | 8 - CAAAGUGCUCAUAGUGCAGGUAG - 30 |
| Evidence |
experimental
SOLiD [3] |
Mature rno-miR-20b-3p
| Accession | MIMAT0003212 |
| Description | Rattus norvegicus rno-miR-20b-3p mature miRNA |
| Sequence | 46 - ACUGCAGUGUGAGCACUUCUGG - 67 |
| Evidence |
experimental
cloned [1-2], SOLiD [3] |
References
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