Stem-loop hsa-mir-548b

Accession

MI0003596

Symbol

HGNC: MIR548B

Description

Homo sapiens hsa-mir-548b precursor miRNA

Literature search

47 open access papers mention hsa-mir-548b
(157 sentences)

Sequence

12970 reads, 236 reads per million, 78 experiments

cagacuauauauuuagguuggcgcAAAAGUAAUUGUGGUUUUGGCCuuuauuuucaauggCAAGAACCUCAGUUGCUUUUGUgccaaccuaauacuu
............(((((((((((((((((((((((.((((((.(((............))).)))))).))))))))))))))))))))))).....

Structure

cagacuauauau                       U      G   uuuau 
            uuagguuggcgcAAAAGUAAUUG GGUUUU GCC     u
            ||||||||||||||||||||||| |||||| |||      
            aauccaaccgUGUUUUCGUUGAC CCAAGA Cgg     u
-------uucau                       U      A   uaacu 

Annotation confidence High

Genome context

chr6: 119069047-119069143 [-]

Disease association

hsa-mir-548b is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-548b-5p

• Accession: MIMAT0004798
• Description: Homo sapiens hsa-miR-548b-5p mature miRNA
• Sequence: 25 - AAAAGUAAUUGUGGUUUUGGCC - 46
• Evidence: experimental ; cloned [2]

Mature hsa-miR-548b-3p

• Accession: MIMAT0003254
• Description: Homo sapiens hsa-miR-548b-3p mature miRNA
• Sequence: 61 - CAAGAACCUCAGUUGCUUUUGU - 82
• Evidence: experimental ; SAGE [1], cloned [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16505370
   The colorectal microRNAome
   "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
   "Proc Natl Acad Sci U S A (2006) 103:3687-3692