Stem-loop hsa-mir-643

Accession

MI0003658

Symbol

HGNC: MIR643

Description

Homo sapiens hsa-mir-643 precursor miRNA mir-643

Gene
family

RF00980; mir-643

Literature search

6 open access papers mention hsa-mir-643
(11 sentences)

Sequence

1139 reads, 4.0 reads per million, 115 experiments

accaagugauauucauugucuACCUGAGCUAGAAUACAAGUAGUUggcgucuucagagacACUUGUAUGCUAGCUCAGGUAGauauugaaugaaaaa
.........((((((.((((((((((((((((.((((((((.(((..(.......).))))))))))).)))))))))))))))).)))))).....

Structure

accaaguga      u                A        A   gg gu 
         uauuca ugucuACCUGAGCUAG AUACAAGU GUU  c  c
         |||||| |||||||||||||||| |||||||| |||  |  u
         guaagu auaGAUGGACUCGAUC UAUGUUCA cag  g  u
----aaaaa      u                G        -   -a ac 

Annotation confidence Medium

Genome context

chr19: 52281797-52281893 [+]

Disease association

hsa-mir-643 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-643-5p

• Accession: MIMAT0060799
• Description: Homo sapiens hsa-miR-643-5p mature miRNA
• Sequence: 22 - ACCUGAGCUAGAAUACAAGUAGUU - 45
• Evidence: experimental ; SAGE [1]

Mature hsa-miR-643-3p

• Accession: MIMAT0003313
• Description: Homo sapiens hsa-miR-643-3p mature miRNA
• Sequence: 61 - ACUUGUAUGCUAGCUCAGGUAG - 82
• Evidence: experimental ; SAGE [1]

References

1. PubMed ID: 16505370
   The colorectal microRNAome
   "Cummins JM, He Y, Leary RJ, Pagliarini R, Diaz LA Jr, Sjoblom T, Barad O, Bentwich Z, Szafranska AE, Labourier E, Raymond CK, Roberts BS, Juhl H, Kinzler KW, Vogelstein B, Velculescu VE"
   "Proc Natl Acad Sci U S A (2006) 103:3687-3692