Stem-loop dre-mir-31

Accession

MI0003691

Description

Danio rerio dre-mir-31 precursor miRNA

Literature search

40 open access papers mention dre-mir-31
(94 sentences)

Sequence

214296 reads, 421.0 reads per million, 265 experiments

gaagagaUGGCAAGAUGUUGGCAUAGCUGuuaauguuuaugggccUGCUAUGCCUCCAUAUUGCCAUUucug
..(((((((((((.(((..((((((((.(((..........)))..))))))))..))).))))))))))).

Structure

ga           G   UU        -U   aaug 
  agagaUGGCAA AUG  GGCAUAGC  Guu    u
  ||||||||||| |||  ||||||||  |||     
  ucuUUACCGUU UAC  CCGUAUCG  cgg    u
-g           A   CU        Uc   guau 

Annotation confidence High

Genome context

chr7: 73263751-73263822 [-]

Mature dre-miR-31-5p

• Accession: MIMAT0003347
• Description: Danio rerio dre-miR-31-5p mature miRNA
• Sequence: 8 - UGGCAAGAUGUUGGCAUAGCUG - 29
• Evidence: experimental ; array [1], in-situ [1]

Mature dre-miR-31-3p

• Accession: MIMAT0060902
• Description: Danio rerio dre-miR-31-3p mature miRNA
• Sequence: 46 - UGCUAUGCCUCCAUAUUGCCAUU - 68
• Evidence: experimental ; array [1], in-situ [1]

References

1. PubMed ID: 15919954
   MicroRNA expression in zebrafish embryonic development
   "Wienholds E, Kloosterman WP, Miska E, Alvarez-Saavedra E, Berezikov E, de Bruijn E, Horvitz HR, Kauppinen S, Plasterk RH"
   "Science (2005) 309:310-311