miRBase entry: gga-mir-499

Stem-loop gga-mir-499


Accession
MI0003710
Description
Gallus gallus gga-mir-499 precursor miRNA mir-499
Gene
family?
RF00745; mir-499

Literature search
10 open access papers mention gga-mir-499
(32 sentences)

Sequence

1116889 reads, 12379 reads per million, 5 experiments
uuugagggagcggcagUUAAGACUUGUAGUGAUGUUUAGauaauguauuacaugAACAUCACUUUAAGUCUGUGCUacuucucuccucauu
..((((((((.((.(((..(((((((.(((((((((((..(((....)))..))))))))))).)))))))..))).)).))).)))))..

Structure
uu     -   c  c   UA       U           Ga   u 
  ugagg gag gg agU  AGACUUG AGUGAUGUUUA  uaa g
  ||||| ||| || |||  ||||||| |||||||||||  |||  
  acucc cuc uc UCG  UCUGAAU UCACUACAAgu  auu u
uu     u   u  a   UG       U           ac   a 


Annotation confidence High
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Genome context
chr20: 2734854-2734944 [-]

Database links

Mature gga-miR-499-5p

Accession MIMAT0003367
Description Gallus gallus gga-miR-499-5p mature miRNA
Sequence 17 - UUAAGACUUGUAGUGAUGUUUAG - 39
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature gga-miR-499-3p

Accession MIMAT0026634
Description Gallus gallus gga-miR-499-3p mature miRNA
Sequence 55 - AACAUCACUUUAAGUCUGUGCU - 76
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45