Stem-loop gga-mir-499

Accession

MI0003710

Description

Gallus gallus gga-mir-499 precursor miRNA mir-499

Gene
family

RF00745; mir-499

Literature search

10 open access papers mention gga-mir-499
(32 sentences)

Sequence

1116889 reads, 12018 reads per million, 5 experiments

uuugagggagcggcagUUAAGACUUGUAGUGAUGUUUAGauaauguauuacaugAACAUCACUUUAAGUCUGUGCUacuucucuccucauu
..((((((((.((.(((..(((((((.(((((((((((..(((....)))..))))))))))).)))))))..))).)).))).)))))..

Structure

uu     -   c  c   UA       U           Ga   u 
  ugagg gag gg agU  AGACUUG AGUGAUGUUUA  uaa g
  ||||| ||| || |||  ||||||| |||||||||||  |||  
  acucc cuc uc UCG  UCUGAAU UCACUACAAgu  auu u
uu     u   u  a   UG       U           ac   a 

Annotation confidence Medium

Genome context

chr20: 2734854-2734944 [-]

Mature gga-miR-499-5p

• Accession: MIMAT0003367
• Description: Gallus gallus gga-miR-499-5p mature miRNA
• Sequence: 17 - UUAAGACUUGUAGUGAUGUUUAG - 39
• Evidence: experimental ; Illumina [1]

Mature gga-miR-499-3p

• Accession: MIMAT0026634
• Description: Gallus gallus gga-miR-499-3p mature miRNA
• Sequence: 55 - AACAUCACUUUAAGUCUGUGCU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45