Accession
MI0003731
Description
Epstein Barr virus
ebv-mir-BART9 precursor miRNA
Sequence
cagcuguuguuugUACUGGACCCUGAAUUGGAAACaguaacuuggauucugUAACACUUCAUGGGUCCCGUAGUgacaacuaugcug
((((.((((((..(((.((((((((((.((...((((...........))))..)).)))).)))))).)))..))))))...))))
((((.((((((..(((.((((((((((.((...((((...........))))..)).)))).)))))).)))..))))))...))))
Structure
--u ug U - U GAA uaac
cagc guuguu UAC GGACCC UGAA UG ACag u
|||| |||||| ||| |||||| |||| || |||| u
gucg caacag AUG CCUGGG ACUU AC Uguc g
uau UG C U C -AA uuag
Annotation confidence
Low
Do you think this miRNA is real?
Comments
mir-BART9 was discovered independently by two groups. Cai et al mapped the ends of the mature sequence by cloning [1]. Grundhoff et al confirmed that the 3' arm gives rise to a mature miRNA product, but didnot experimentally determine the extents of that product [2]. This sequence was misnamed miR-BART13 in [2]. The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [3]. The ends of the miRNA may be offset with respect to previous annotations.
Genome context
HHV507799: 146946-147032 [+]
Clustered miRNAs
21 other miRNAs are < 10 kb from ebv-mir-BART9
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Disease association
ebv-mir-BART9 is associated with one or more human diseases in the Human microRNA Disease Database
| Disease | Description | Category | PubMed ID |
|---|
Database links
Mature ebv-miR-BART9-5p
| Accession | MIMAT0004816 |
| Description | Epstein Barr virus ebv-miR-BART9-5p mature miRNA |
| Sequence | 14 - UACUGGACCCUGAAUUGGAAAC - 35 |
| Evidence |
experimental
cloned [3] |
Mature ebv-miR-BART9-3p
| Accession | MIMAT0003419 |
| Description | Epstein Barr virus ebv-miR-BART9-3p mature miRNA |
| Sequence | 52 - UAACACUUCAUGGGUCCCGUAGU - 74 |
| Evidence |
experimental
cloned [1,3], array [2], Northern [2] |
References
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