Stem-loop rlcv-mir-rL1-1

Accession

MI0003737

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-1 precursor miRNA

Sequence

ggccggcuccuuauUAACCUGAUCAGCCCCGGGGUUgccugucuuagcacuaaCUCCGGGCCUGAAGAGGUUGACaagaaggguc
((((..((.(((.(((((((..((((.((((((((((..(((....))).)))))))))).))))..))))))).))).))))))

Structure

    gg  c   a       GA    C          cc   c 
ggcc  cu cuu uUAACCU  UCAG CCCGGGGUUg  ugu u
||||  || ||| |||||||  |||| ||||||||||  |||  
cugg  ga gaa AGUUGGA  AGUC GGGCCUCaau  acg u
    --  a   C       GA    C          -c   a 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-1-5p

• Accession: MIMAT0003427
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-1-5p mature miRNA
• Sequence: 15 - UAACCUGAUCAGCCCCGGGGUU - 36
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-1-3p

• Accession: MIMAT0019084
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-1-3p mature miRNA
• Sequence: 54 - CUCCGGGCCUGAAGAGGUUGAC - 75
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635