Stem-loop rlcv-mir-rL1-2

Accession

MI0003738

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-2 precursor miRNA

Sequence

gcccccacuuuuAAAUUCUGCCACAGAAGAUAGCugauacucgauguUAUCUUUUGCGGGGGAAUUUCcaaguguuggc
(((..(((((..(((((((.((.(((((((((((...........))))))))))).)).)))))))..)))))..)))

Structure

   cc     uu       G  A           ugau 
gcc  cacuu  AAAUUCU CC CAGAAGAUAGC    a
|||  |||||  ||||||| || |||||||||||    c
cgg  gugaa  UUUAAGG GG GUUUUCUAUug    u
   uu     cC       G  C           uagc 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-2-3p

• Accession: MIMAT0003428
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-2-3p mature miRNA
• Sequence: 48 - UAUCUUUUGCGGGGGAAUUUC - 68
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-2-5p

• Accession: MIMAT0019085
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-2-5p mature miRNA
• Sequence: 13 - AAAUUCUGCCACAGAAGAUAGC - 34
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635