Stem-loop rlcv-mir-rL1-3

Accession

MI0003739

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-3 precursor miRNA

Sequence

cuggguccucggggggCGGUGGAGACCGCGGGUGCGGUGauugcuugacccUCGCACCUCGCCGUCUCUACUGCucgccggguacgucugg
....((.(((((.(((((((((((((.(((((((((((.(.....).)))...))))).))).))))))))))))).))))).))......

Structure

--cugg  c     g             C   -     ---   G u 
      gu cucgg gggCGGUGGAGAC GCG GGUGC   GGU a u
      || ||||| ||||||||||||| ||| |||||   ||| | g
      ca gggcc cuCGUCAUCUCUG CGC CCACG   cca u c
ggucug  u     g             C   U     CUc   g u 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-3-3p

• Accession: MIMAT0003429
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-3-3p mature miRNA
• Sequence: 52 - UCGCACCUCGCCGUCUCUACUGC - 74
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-3-5p

• Accession: MIMAT0037329
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-3-5p mature miRNA
• Sequence: 17 - CGGUGGAGACCGCGGGUGCGGUG - 39
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635