Stem-loop rlcv-mir-rL1-4

Accession

MI0003740

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-4 precursor miRNA

Sequence

gagaugcuuuaaccuuggggggACCUAGUAAUUGUGCGGUGUUgugaguguuagaaaCACCACACGAUCCACUAGGUCucaccugggcuccuugccuc
................(((((((((((((.((((((.((((((............)))))).))))))..)))))))))).)))((((.....)))).

Structure

gagaugcuuuaaccuu   -          -A      C      gugag 
                ggg gggACCUAGU  AUUGUG GGUGUU     u
                ||| ||||||||||  |||||| ||||||      
                ucc cuCUGGAUCA  UAGCAC CCACaa     g
--cuccguuccucggg   a          CC      A      agauu 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-4-5p

• Accession: MIMAT0003430
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-4-5p mature miRNA
• Sequence: 23 - ACCUAGUAAUUGUGCGGUGUU - 43
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-4-3p

• Accession: MIMAT0003431
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-4-3p mature miRNA
• Sequence: 58 - CACCACACGAUCCACUAGGUC - 78
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635