Stem-loop rlcv-mir-rL1-5

Accession

MI0003741

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-5 precursor miRNA

Sequence

cuucgguggAACCUAGUGCCGGUGAUGUGCUguggauaggcagcuagCGCACCACUUUUCACUAGGUGucaccgggg
(((((((((.((((((((..((((.(((((((((......))..))))))).))))...)))))))).)))))))))

Structure

         A        -CC    A       --  ga 
cuucggugg ACCUAGUG   GGUG UGUGCUg  ug  u
||||||||| ||||||||   |||| |||||||  ||   
ggggccacu UGGAUCAC   UCAC ACGCgau  ac  a
         G        UUU    C       cg  gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-5-5p

• Accession: MIMAT0003432
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-5-5p mature miRNA
• Sequence: 10 - AACCUAGUGCCGGUGAUGUGCU - 31
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-5-3p

• Accession: MIMAT0003433
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-5-3p mature miRNA
• Sequence: 48 - CGCACCACUUUUCACUAGGUG - 68
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635