Stem-loop rlcv-mir-rL1-6

Accession

MI0003742

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-6 precursor miRNA

Sequence

cccuuggugggUUUUAGUGGAAGUGACGUGCUGUgauuagguacccaUAGCACCGCUAUCCACUAUGUCUcaccaggg
.((((((((((...(((((((((((..((((((((..........)))))))))))).)))))))...))))))))))

Structure

c          UUU       -    AC        auua 
 ccuugguggg   UAGUGGA AGUG  GUGCUGUg    g
 ||||||||||   ||||||| ||||  ||||||||     
 gggaccacUC   AUCACCU UCGC  CACGAUac    g
-          UGU       A    --        ccau 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-6-5p

• Accession: MIMAT0003434
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-6-5p mature miRNA
• Sequence: 12 - UUUUAGUGGAAGUGACGUGCUGU - 34
• Evidence: experimental ; cloned [1], Illumina [3-4]

Mature rlcv-miR-rL1-6-3p

• Accession: MIMAT0003435
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-6-3p mature miRNA
• Sequence: 48 - UAGCACCGCUAUCCACUAUGUCU - 70
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


3. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


4. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635