Stem-loop rlcv-mir-rL1-7

Accession

MI0003743

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-7 precursor miRNA

Sequence

ccgugugccgcuuCGAGGUAAACAUCGGCUUACUGaagucucuuaguaaggucAGUGGGCCUGUUUCCCUCACAgagacacaugg
(((((((.(.((..((((.(((((..((((((((((..(((.......)))))))))))))))))).))))..)).).)))))))

Structure

       c g  uC    U     UC          ag   cu 
ccgugug c cu  GAGG AAACA  GGCUUACUGa  ucu  u
||||||| | ||  |||| |||||  ||||||||||  |||  a
gguacac g gA  CUCC UUUGU  CCGGGUGAcu  gga  g
       a a  CA    C     --          --   au 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-7-5p

• Accession: MIMAT0003436
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-7-5p mature miRNA
• Sequence: 14 - CGAGGUAAACAUCGGCUUACUG - 35
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-7-3p

• Accession: MIMAT0019086
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-7-3p mature miRNA
• Sequence: 54 - AGUGGGCCUGUUUCCCUCACA - 74
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635