Stem-loop rlcv-mir-rL1-10

Accession

MI0003746

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-10 precursor miRNA

Sequence

gugguccucugacAUCGGGUUUCCGCUGUACUUGCAuaaugagaacuuugUAGUGCGCCGGUGACCUGAUAGcagcggucucac
((((.((.(((..((((((((.(((.((((((.(((............))))))))).))).))))))))..))).)).).)))

Structure

   - u  u   ac        U   C      U   uaaug 
gug g cc cug  AUCGGGUU CCG UGUACU GCA     a
||| | || |||  |||||||| ||| |||||| |||      
cac c gg gac  UAGUCCAG GGC GCGUGA Ugu     g
   u u  c   GA        U   C      -   uucaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-10-3p

• Accession: MIMAT0003439
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-10-3p mature miRNA
• Sequence: 51 - UAGUGCGCCGGUGACCUGAUAG - 72
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-10-5p

• Accession: MIMAT0019088
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-10-5p mature miRNA
• Sequence: 14 - AUCGGGUUUCCGCUGUACUUGCA - 36
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635