Stem-loop rlcv-mir-rL1-11

Accession

MI0003747

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-11 precursor miRNA

Sequence

ggggccuugccuCCGUAUCCUAUCAAGUGUGACGuggcuuuguucgUGACACUCGAUAGGAUACGGGGguaaaggcgccu
((.(((((((((((((((((((((.(((((.(((.(((...)))))).))))).)))))))))))))))).))))).)).

Structure

-  g     -                A     G   u   u 
 gg gccuu gccuCCGUAUCCUAUC AGUGU ACG ggc  
 || ||||| |||||||||||||||| ||||| ||| ||| u
 cc cggaa ugGGGGCAUAGGAUAG UCACA Ugc uug  
u  g     a                C     G   -   u 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-11-3p

• Accession: MIMAT0003440
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-11-3p mature miRNA
• Sequence: 47 - UGACACUCGAUAGGAUACGGGG - 68
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-11-5p

• Accession: MIMAT0019089
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-11-5p mature miRNA
• Sequence: 13 - CCGUAUCCUAUCAAGUGUGACG - 34
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635