Stem-loop rlcv-mir-rL1-13

Accession

MI0003749

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-13 precursor miRNA

Sequence

cccgugucuugauCCUGGGCAUGGGCUAUGAAACAguucuaacaauugGAUCAUAGCCAGUGUCCAGGGAcggugcaccggg
(((((((.(((.((((((((((.((((((((..(((((.....)))))..)))))))).)))))))))).))).))).))))

Structure

    -   c   a          G        AA     c 
cccg ugu uug uCCUGGGCAU GGCUAUGA  CAguu u
|||| ||| ||| |||||||||| ||||||||  ||||| a
gggc acg ggc GGGACCUGUG CCGAUACU  guuaa a
    c   u   A          A        AG     c 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-13-3p

• Accession: MIMAT0003443
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-13-3p mature miRNA
• Sequence: 49 - GAUCAUAGCCAGUGUCCAGGGA - 70
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-13-5p

• Accession: MIMAT0019090
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-13-5p mature miRNA
• Sequence: 14 - CCUGGGCAUGGGCUAUGAAACA - 35
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635