Stem-loop rlcv-mir-rL1-14-1

Accession

MI0003750

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-14-1 precursor miRNA

Sequence

gcccuccggcugggUCGGACGGUCUGGUGCGCUUGAUguguuuucgguaccaUCGCACAUCAGGCUGAACGACUcagaggaguggc
(((((((..((((((((..((((((((((.((..((((.((.......)))))))).))))))))))..)))))))).)))).)))

Structure

   -    gg        GA          C  UU    u  uu 
gcc cucc  cugggUCG  CGGUCUGGUG GC  GAUg gu  u
||| ||||  ||||||||  |||||||||| ||  |||| ||  c
cgg gagg  gacUCAGC  GUCGGACUAC CG  CUac ca  g
   u    -a        AA          A  --    -  ug 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-14-5p

• Accession: MIMAT0003444
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-14-5p mature miRNA
• Sequence: 15 - UCGGACGGUCUGGUGCGCUUGAU - 37
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-14-3p

• Accession: MIMAT0003445
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-14-3p mature miRNA
• Sequence: 53 - UCGCACAUCAGGCUGAACGACU - 74
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635