Stem-loop rlcv-mir-rL1-15

Accession

MI0003751

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-15 precursor miRNA

Sequence

uuccuggagccggugaccugagACCCACCCUUCUCGACGGGGCagguguuauaagugUCCUGUAGAGUAUGGGUGUGGUUUuagugcacgcgggag
.........((((((..(((((((((((((..(((.((((((((...........)))))))).)))...))))).))))))))..))).)))...

Structure

uuccuggag   -   ac        -     -UU   G        ggug 
         ccg gug  cugagACC CACCC   CUC ACGGGGCa    u
         ||| |||  |||||||| |||||   ||| ||||||||    u
         ggc cac  gauUUUGG GUGGG   GAG UGUCCUgu    a
------gag   g   gu        U     UAU   A        gaau 

Annotation confidence Low

Genome context

Unknown

Mature rlcv-miR-rL1-15-3p

• Accession: MIMAT0003446
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-15-3p mature miRNA
• Sequence: 58 - UCCUGUAGAGUAUGGGUGUGGUUU - 81
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature rlcv-miR-rL1-15-5p

• Accession: MIMAT0019091
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-15-5p mature miRNA
• Sequence: 23 - ACCCACCCUUCUCGACGGGGC - 43
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 16557291
   Epstein-Barr virus microRNAs are evolutionarily conserved and differentially expressed
   Cai X, Schäfer A, Lu S, Bilello JP, Desrosiers RC, Edwards R, Raab-Traub N, Cullen BR
   PLoS Pathog (2006) 2:e23


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635