Stem-loop mmu-mir-1247

Accession

MI0004120

Symbol

MGI: Mir1247

Description

Mus musculus mmu-mir-1247 precursor miRNA mir-1247

Gene
family

RF03271; mir-1247

Literature search

3 open access papers mention mmu-mir-1247
(4 sentences)

Sequence

4524 reads, 50 reads per million, 65 experiments

cggccgccgggcgcACCCGUCCCGUUCGUCCCCGGAcguugcucucugcccCGGGAACGUCGAGACUGGAGCgcccgaacug
.......(((((((.((.(((.((..(((.(((((..((........)).))))).))).)).))).)).))))))).....

Structure

cggccgc       A  C   C  UU   C     Ac  ugc 
       cgggcgc CC GUC CG  CGU CCCGG  gu   u
       ||||||| || ||| ||  ||| |||||  ||    
       gcccgCG GG CAG GC  GCA GGGCc  cg   c
--gucaa       A  U   A  -U   A     -c  ucu 

Annotation confidence High

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

chr12: 110278048-110278129 [-]

Mature mmu-miR-1247-5p

• Accession: MIMAT0014800
• Description: Mus musculus mmu-miR-1247-5p mature miRNA
• Sequence: 15 - ACCCGUCCCGUUCGUCCCCGGA - 36
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-1247-3p

• Accession: MIMAT0014801
• Description: Mus musculus mmu-miR-1247-3p mature miRNA
• Sequence: 52 - CGGGAACGUCGAGACUGGAGC - 72
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298