Stem-loop mmu-mir-3475

Accession

MI0004220

Symbol

MGI: Mir3475

Description

Mus musculus mmu-mir-3475 precursor miRNA

Sequence

1461 reads, 41 reads per million, 46 experiments

cAAAUCAUGUACCCCCACAGAGGguccagaugguucuuaguucuUCUGGAGGCACAUGGUUUGAA
((((((((((...((..(((((((...(((....)))....)))))))..)).))))))))))..

Structure

--          ACC  CA       -ucc   u 
  cAAAUCAUGU   CC  CAGAGGg    aga g
  ||||||||||   ||  |||||||    |||  
  GUUUGGUACA   GG  GUCUucu    ucu g
AA          --C  AG       ugau   u 

Annotation confidence Not enough data

Comments

This sequence was identified as a miRNA candidate by Berezikov et al. using RAKE and MPSS techniques [1]. Expression was independently shown by Illumina sequencing [2].

Genome context

chrX: 140310948-140311012 [+]

Mature mmu-miR-3475-3p

• Accession: MIMAT0015219
• Description: Mus musculus mmu-miR-3475-3p mature miRNA
• Sequence: 45 - UCUGGAGGCACAUGGUUUGAA - 65
• Evidence: experimental ; Illumina [2-3]

Mature mmu-miR-3475-5p

• Accession: MIMAT0026642
• Description: Mus musculus mmu-miR-3475-5p mature miRNA
• Sequence: 2 - AAAUCAUGUACCCCCACAGAGG - 23
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298


3. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45