Stem-loop mmu-mir-3058

Accession

MI0004418

Symbol

MGI: Mir3058

Description

Mus musculus mmu-mir-3058 precursor miRNA

Literature search

2 open access papers mention mmu-mir-3058
(3 sentences)

Sequence

175 reads, 10 reads per million, 49 experiments

uccagcguuggagUCAGCCACGGCUUACCUGGAAGAuugaaugucuacuuggcuuucUUCCUGUCAGCCGUGGGUGCCucuugcuacugga
(((((.((.((((.((.((((((((.((..((((((......(((.....)))..)))))).)).)))))))).)).)))).))..)))))

Structure

     -c  u    U  G        U  CU      uugaau   u 
uccag  gu ggag CA CCACGGCU AC  GGAAGA      guc a
|||||  || |||| || |||||||| ||  ||||||      ||| c
agguc  cg ucuC GU GGUGCCGA UG  CCUUcu      cgg u
     au  u    C  G        C  -U      ----uu   u 

Annotation confidence High

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

chr10: 95559231-95559321 [-]

Mature mmu-miR-3058-5p

• Accession: MIMAT0014813
• Description: Mus musculus mmu-miR-3058-5p mature miRNA
• Sequence: 14 - UCAGCCACGGCUUACCUGGAAGA - 36
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-3058-3p

• Accession: MIMAT0014814
• Description: Mus musculus mmu-miR-3058-3p mature miRNA
• Sequence: 58 - UUCCUGUCAGCCGUGGGUGCC - 78
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298