Stem-loop mmu-mir-3099

Accession

MI0004485

Symbol

MGI: Mir3099

Description

Mus musculus mmu-mir-3099 precursor miRNA mir-3099

Gene
family

RF03406; mir-3099

Literature search

5 open access papers mention mmu-mir-3099
(70 sentences)

Sequence

3688 reads, 32 reads per million, 44 experiments

aucgauccccaucCCAGCUUCCUUCCAGCCCUUGauguuuuaguacgcacaUAGGCUAGAGAGAGGUUGGGGAuggggaaagau
(((..((((((((((((((((.(((.((((..((.(((........)))))..)))).))).)))))).))))))))))..)))

Structure

   ga          -      C   C    CU  a   uuu 
auc  uccccaucCC AGCUUC UUC AGCC  UG ugu   a
|||  |||||||||| |||||| ||| ||||  || |||    
uag  agggguAGGG UUGGAG GAG UCGG  ac acg   g
   aa          G      A   A    AU  -   cau 

Annotation confidence Not enough data

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

chr7: 6803587-6803670 [+]

Mature mmu-miR-3099-5p

• Accession: MIMAT0014815
• Description: Mus musculus mmu-miR-3099-5p mature miRNA
• Sequence: 14 - CCAGCUUCCUUCCAGCCCUUG - 34
• Evidence: experimental ; Illumina [2-3]

Mature mmu-miR-3099-3p

• Accession: MIMAT0014816
• Description: Mus musculus mmu-miR-3099-3p mature miRNA
• Sequence: 52 - UAGGCUAGAGAGAGGUUGGGGA - 73
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298