Stem-loop mmu-mir-344d-1

Accession

MI0004524

Symbol

MGI: Mir344d-1

Description

Mus musculus mmu-mir-344d-1 precursor miRNA mir-344

Gene
family

RF00825; mir-344

Literature search

10 open access papers mention mmu-mir-344d-1
(34 sentences)

Sequence

9356 reads, 47 reads per million, 43 experiments

aucAGUCAGGCUGCUGGCUAUACACCAggacuuaucugguccugGAUAUAACCACUGCCAGACUGAaag
.((((((.(((.(.(((.((((..((((((((.....)))))))).)))).)))).))).))))))...

Structure

--a      A   U C   C    CA        u 
   ucAGUC GGC G UGG UAUA  CCAggacu a
   |||||| ||| | ||| ||||  |||||||| u
   AGUCAG CCG C ACC AUAU  Gguccugg c
gaa      A   U -   A    -A        u 

Annotation confidence Not enough data

Comments

This sequence was identified as a miRNA candidate by Berezikov et al [1], and confirmed later by sequencing [2].

Genome context

chr7: 61683124-61683192 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mmu-mir-344d-1

Mature mmu-miR-344d-3p

• Accession: MIMAT0014808
• Description: Mus musculus mmu-miR-344d-3p mature miRNA
• Sequence: 45 - GAUAUAACCACUGCCAGACUGA - 66
• Evidence: experimental ; Illumina [2]

Mature mmu-miR-344d-1-5p

• Accession: MIMAT0014819
• Description: Mus musculus mmu-miR-344d-1-5p mature miRNA
• Sequence: 4 - AGUCAGGCUGCUGGCUAUACACCA - 27
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


2. PubMed ID: 16954537
   Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
   "Berezikov E, van Tetering G, Verheul M, van de Belt J, van Laake L, Vos J, Verloop R, van de Wetering M, Guryev V, Takada S, van Zonneveld AJ, Mano H, Plasterk R, Cuppen E"
   "Genome Res (2006) 16:1289-1298