Stem-loop mmu-mir-467b

Accession

MI0004671

Symbol

MGI: Mir467b

Description

Mus musculus mmu-mir-467b precursor miRNA

Literature search

29 open access papers mention mmu-mir-467b
(93 sentences)

Sequence

49277 reads, 216.0 reads per million, 151 experiments

ccgugugcgUAAGUGCCUGCAUGUAUAUGCguguauauuuuaugcAUAUACAUACACACACCAACAcacacau
..(((((.((..(((..((.(((((((((((((.......))))))))))))).))..)))..)).)))))..

Structure

cc     c  AA   CC  C             ua 
  gugug gU  GUG  UG AUGUAUAUGCgug  u
  ||||| ||  |||  || |||||||||||||  a
  cacac CA  CAC  AC UACAUAUAcguau  u
ua     A  AC   AC  A             uu 

Annotation confidence High

Comments

The sequence of miR-467 is of low complexity. The sequence maps exactly to several genomic positions, and many more with 1 or 2 substitutions. Confidence in this miRNA might therefore be reduced.

Genome context

2: 10486059-10486131 [+]

Clustered miRNAs

22 other miRNAs are < 10 kb from mmu-mir-467b

Mature mmu-miR-467b-5p

• Accession: MIMAT0005448
• Description: Mus musculus mmu-miR-467b-5p mature miRNA
• Sequence: 10 - UAAGUGCCUGCAUGUAUAUGC - 30
• Evidence: experimental ; MPSS [1], Illumina [2-3]

Mature mmu-miR-467b-3p

• Accession: MIMAT0003478
• Description: Mus musculus mmu-miR-467b-3p mature miRNA
• Sequence: 46 - AUAUACAUACACACACCAACA - 66
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771