Stem-loop mmu-mir-669c

Accession

MI0004673

Symbol

MGI: Mir669c

Description

Mus musculus mmu-mir-669c precursor miRNA

Literature search

20 open access papers mention mmu-mir-669c
(43 sentences)

Sequence

240557 reads, 1454 reads per million, 107 experiments

ccuccauguaugugcauguguguAUAGUUGUGUGUGGAUGUGUGUauuugcauauaaauaacaUACACACACACACACAAGUAAAcacaagugcacaaacagacacagg
(((...(((.(((((((.(((((.((.(((((((((..((((((((((((........))).)))))))))))))))))).)).))))).))))))).))).....)))

Structure

   --cca   a       g     A  G         GA         -   cau 
ccu     ugu ugugcau ugugu UA UUGUGUGUG  UGUGUGUau uug   a
|||     ||| ||||||| ||||| || |||||||||  ||||||||| |||    
gga     aca acacgug acacA AU AACACACAC  ACACACAUa aau   u
   cacag   a       a     A  G         --         c   aaa 

Annotation confidence High

Genome context

chr2: 10509296-10509404 [+]

Clustered miRNAs

23 other miRNAs are < 10 kb from mmu-mir-669c

Mature mmu-miR-669c-5p

• Accession: MIMAT0003479
• Description: Mus musculus mmu-miR-669c-5p mature miRNA
• Sequence: 24 - AUAGUUGUGUGUGGAUGUGUGU - 45
• Evidence: experimental ; MPSS [1], cloned [2], Illumina [3-4]

Mature mmu-miR-669c-3p

• Accession: MIMAT0017253
• Description: Mus musculus mmu-miR-669c-3p mature miRNA
• Sequence: 64 - UACACACACACACACAAGUAAA - 85
• Evidence: experimental ; Illumina [4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


3. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


4. PubMed ID: 16582102
   The expression profile of microRNAs in mouse embryos
   "Mineno J, Okamoto S, Ando T, Sato M, Chono H, Izu H, Takayama M, Asada K, Mirochnitchenko O, Inouye M, Kato I"
   "Nucleic Acids Res (2006) 34:1765-1771