Stem-loop ppt-MIR1212

Accession

MI0004711

Description

Physcomitrella patens ppt-MIR1212 precursor miRNA

Literature search

1 open access papers mention ppt-MIR1212
(1 sentences)

Sequence

235297 reads, 10068.0 reads per million, 10 experiments

guaugaggaguugCAUCCUCUGCUGUGCCCACAUGcgucguggcgcguggcggccgcgCGUGGGACAGCAUAGAAUGCGgauccuugua
.((((((((.((((((.((.((((((.(((((.((((..((.((.....)).)))))).))))))))))).)).)))))).))))))))

Structure

g        g      C  C      G     A    uc  g  g 
 uaugagga uugCAU CU UGCUGU CCCAC UGcg  gu gc c
 |||||||| |||||| || |||||| ||||| ||||  || || g
 auguuccu gGCGUA GA ACGACA GGGUG gcgc  cg cg u
-        a      A  U      -     C    --  g  g 

Annotation confidence High

Genome context

Chr13: 2520122-2520210 [+]

Mature ppt-miR1212-5p

• Accession: MIMAT0053650
• Description: Physcomitrella patens ppt-miR1212-5p mature miRNA
• Sequence: 14 - CAUCCUCUGCUGUGCCCACAUG - 35
• Evidence: experimental ; unknown

Mature ppt-miR1212-3p

• Accession: MIMAT0003901
• Description: Physcomitrella patens ppt-miR1212-3p mature miRNA
• Sequence: 59 - CGUGGGACAGCAUAGAAUGCG - 79
• Evidence: experimental ; Northern [1], cloned [2], 454 [3]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


3. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37