Stem-loop ppt-MIR1214

Accession

MI0004713

Description

Physcomitrella patens ppt-MIR1214 precursor miRNA

Sequence

1439690 reads, 62253.0 reads per million, 10 experiments

ugugguuggguuuucUACUAUGAGAAUCUCGCGGCCaaggugguuuuggacgaccauuucUGCGAUUUUCUCAUAGCAGAUgaacuagcccca
((.((((((....(((.(((((((((..((((((...((((((((......))))))))))))))..))))))))).)))....)))))).))

Structure

  u      guuu   A         UC      CCa        uu 
ug gguugg    ucU CUAUGAGAA  UCGCGG   aggugguu  g
|| ||||||    ||| |||||||||  ||||||   ||||||||   
ac ccgauc    AGA GAUACUCUU  AGCGUc   uuuaccag  g
  c      aagU   C         UU      ---        ca 

Annotation confidence High

Genome context

Chr10: 8639527-8639619 [-]

Mature ppt-miR1214-5p

• Accession: MIMAT0003903
• Description: Physcomitrella patens ppt-miR1214-5p mature miRNA
• Sequence: 16 - UACUAUGAGAAUCUCGCGGCC - 36
• Evidence: experimental ; Northern [1], 454 [2]

Mature ppt-miR1214-3p

• Accession: MIMAT0053651
• Description: Physcomitrella patens ppt-miR1214-3p mature miRNA
• Sequence: 61 - UGCGAUUUUCUCAUAGCAGAU - 81
• Evidence: experimental ; unknown

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37