Stem-loop ppt-MIR1215

Accession

MI0004714

Description

Physcomitrella patens ppt-MIR1215 precursor miRNA

Sequence

cgugaagguacuggagcUCAUUGCAAAACUGUAUACGAuccuuucaacuugaacagcauucgaaagcuuguggcuauugcucagaggaugguauacaguuucgcuguggaacuccagucccuacaug
((((.(((.(((((((.((((.((.(((((((((((.((((((((((.....(((((........)).))).....)))...))))))).))))))))))).)).))))..))))))).))).))))

Structure

    a   u       -c    U  A           G       ---   cuuga   -  auu 
cgug agg acuggag  UCAU GC AAACUGUAUAC Auccuuu   caa     aca gc   c
|||| ||| |||||||  |||| || ||||||||||| |||||||   |||     ||| ||    
guac ucc ugaccuc  ggug cg uuugacauaug uaggaga   guu     ugu cg   g
    a   c       aa    u  c           g       cuc   aucgg   u  aaa 

Annotation confidence Not enough data

Genome context

Chr17: 11853573-11853699 [+]

Mature ppt-miR1215

• Accession: MIMAT0003904
• Description: Physcomitrella patens ppt-miR1215 mature miRNA
• Sequence: 18 - UCAUUGCAAAACUGUAUACGA - 38
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37