Stem-loop ppt-MIR1216

Accession

MI0004715

Description

Physcomitrella patens ppt-MIR1216 precursor miRNA

Sequence

gcgagguugguuuuguauguccagugucugucaaugucguUGAUGGUGAUGCGCUUGUAUCucgaaaggaccauucgugagggaauggugucgucguguuacaagcccaucacccucaacgacaugacccgccuguuucauacuccaccaaaccucgc
(((((((((((...(((((..(((.((..((((.(((((((((.(((((((.(((((((.(.(((..(.(((((((......))))))).)..))).).))))))).))))))).)))))))))))))..)))))...)))))...))).))))))))

Structure

        -   uuu     -uc   u  cu    a         U       C       U u   aa g       gu 
gcgagguu ggu   guaug   cag gu  guca ugucguUGA GGUGAUG GCUUGUA C cga  g accauuc  g
|||||||| |||   |||||   ||| ||  |||| ||||||||| ||||||| ||||||| | |||  | |||||||   
cgcuccaa cca   cauac   guc cg  cagu acagcaacu ccacuac cgaacau g gcu  u ugguaag  a
        a   ccu     uuu   -  cc    -         c       c       u u   gc g       gg 

Annotation confidence Not enough data

Genome context

Chr06: 863403-863560 [+]

Mature ppt-miR1216

• Accession: MIMAT0003905
• Description: Physcomitrella patens ppt-miR1216 mature miRNA
• Sequence: 41 - UGAUGGUGAUGCGCUUGUAUC - 61
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37