Stem-loop ppt-MIR1217

Accession

MI0004716

Description

Physcomitrella patens ppt-MIR1217 precursor miRNA

Sequence

uccuguuucugguugaucuUGGUAUCAUGUUGCAAAUGGCaaaaccugugaccggaaugguacucaguuuuugaAAUUUGAAGCAUGAUGUCAAGuacaacggaaguugga
(((..((((((.(((..((((((((((((((.(((((..(((((.(((.((((.....))).).))).)))))..))))).))))))))))))))..)))))))))..)))

Structure

   ug      g   au              G     GG     c   u -   g 
ucc  uuucug uug  cuUGGUAUCAUGUU CAAAU  Caaaa cug g acc g
|||  |||||| |||  |||||||||||||| |||||  ||||| ||| | ||| a
agg  gaaggc aac  GAACUGUAGUACGA GUUUA  guuuu gac c ugg a
   uu      -   au              A     Aa     u   u a   u 

Annotation confidence Not enough data

Genome context

Chr22: 11454069-11454179 [+]

Mature ppt-miR1217-5p

• Accession: MIMAT0004830
• Description: Physcomitrella patens ppt-miR1217-5p mature miRNA
• Sequence: 20 - UGGUAUCAUGUUGCAAAUGGC - 40
• Evidence: experimental ; 454 [2]

Mature ppt-miR1217-3p

• Accession: MIMAT0003906
• Description: Physcomitrella patens ppt-miR1217-3p mature miRNA
• Sequence: 75 - AAUUUGAAGCAUGAUGUCAAG - 95
• Evidence: experimental ; Northern [1], 454 [2]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


2. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37