Stem-loop ppt-MIR1218

Accession

MI0004717

Description

Physcomitrella patens ppt-MIR1218 precursor miRNA

Literature search

1 open access papers mention ppt-MIR1218
(1 sentences)

Sequence

cagugauuacaugugucgugguaggcauCCUUAGAGUCGUAGGCCUCUGuguggaauucaagauaguucacagucguuuugaacacacaucacaggagccuacgacucugaagauaccuaucucgggacaaauuucug
(((.((((...(((.(((.((((((.(((.((((((((((((((.(((((((((..((((((((...........))))))))..).)).)))))).)))))))))))))).))).)))))).))).))))))).)))

Structure

   u    aca   g   u      c   C              C      -  - aa        aguu 
cag gauu   ugu ucg gguagg auC UUAGAGUCGUAGGC UCUGug ug g  uucaagau    c
||| ||||   ||| ||| |||||| ||| |||||||||||||| |||||| || |  ||||||||    a
guc uuaa   aca ggc cuaucc uag agucucagcauccg ggacac ac c  aaguuuug    c
   u    ---   g   u      a   a              a      u  a ac        cuga 

Annotation confidence Not enough data

Genome context

Chr24: 13118494-13118631 [-]

Mature ppt-miR1218

• Accession: MIMAT0003907
• Description: Physcomitrella patens ppt-miR1218 mature miRNA
• Sequence: 29 - CCUUAGAGUCGUAGGCCUCUG - 49
• Evidence: experimental ; Northern [1], cloned [2], 454 [3]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769


3. PubMed ID: 16824179
   Novel micro-RNAs and intermediates of micro-RNA biogenesis from moss
   "Talmor-Neiman M, Stav R, Frank W, Voss B, Arazi T"
   "Plant J (2006) 47:25-37