Accession
MI0004719
Description
Physcomitrella patens
ppt-MIR1219b precursor miRNA
Sequence
8150
reads,
321.0
reads per million, 10 experiments
cuCUUCCUGCCUCUCACUAGCUUcaucccuucgaacccgaagguacuaagguaaggaACUAUUGGGAAGCAGGAACAG
...(((((((.(((((.(((.(((...((((((....))))))(((....)))..)))))).))))).)))))))...
...(((((((.(((((.(((.(((...((((((....))))))(((....)))..)))))).))))).)))))))...
Structure
cuC C C C ---------auc a UUCCUGC UCUCA UAG UUc ccuucg a ||||||| ||||| ||| ||| |||||| AAGGACG AGGGU AUC Aag ggaagc c GAC A U - gaauggaaucau c
Annotation confidence
High
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Genome context
Chr04: 10210127-10210204 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ppt-MIR1219b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ppt-miR1219b-5p
| Accession | MIMAT0003909 |
| Description | Physcomitrella patens ppt-miR1219b-5p mature miRNA |
| Sequence | 3 - CUUCCUGCCUCUCACUAGCUU - 23 |
| Evidence |
experimental
Northern [1], 454 [2] |
Mature ppt-miR1219b-3p
| Accession | MIMAT0053656 |
| Description | Physcomitrella patens ppt-miR1219b-3p mature miRNA |
| Sequence | 58 - ACUAUUGGGAAGCAGGAACAG - 78 |
| Evidence |
experimental
unknown |
References
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